MmuEX6006003 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108355394-108360923:+
Coord C1 exon
chr6:108355394-108355519
Coord A exon
chr6:108356084-108356212
Coord C2 exon
chr6:108360803-108360923
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGTCTCTGTCTCTTTTCTAGGCC
3' ss Score
10.76
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTAAGATCGCTTACATTAACTTCCTGAATCACTGCTATGTGGATACGGAGGTGGAGATGAAGGAGATTTACACAAGCAACCACATGTGGAAGTTGTTTGAGAATTTCCTCGTGGACATCTGCAGG
Seq A exon
GCCTGTAACAACACAAGCGACAGGAAGCACGCAGACTCCATTCTGGAGAAGTACGTCACTGAAATCGTGATGAGCATCGTCACCACCTTCTTCAGCTCTCCCTTCTCAGACCAGAGCACCACTCTGCAG
Seq C2 exon
ACCCGCCAGCCTGTCTTTGTGCAACTCCTGCAAGGCGTGTTCCGAGTTTACCACTGCAACTGGCTGATGCCGAGCCAAAAAGCCTCGGTGGAGAGCTGCATCCGGGTGCTCTCTGACGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGCTTACATTAACTTCCTGA
R:
TACGTCAGAGAGCACCCGGAT
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: