BtaEX6093957 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21753013-21766384:-
Coord C1 exon
chr22:21766259-21766384
Coord A exon
chr22:21763616-21763744
Coord C2 exon
chr22:21753013-21753133
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGCGTTGACTTGTCCTCCAGGCC
3' ss Score
7.36
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTAAAATTGCCTACATTAACTTCCTGAATCACTGCTATGTGGACACGGAAGTGGAAATGAAGGAGATTTATACCAGCAATCACATGTGGAAATTGTTTGAGAATTTCCTCGTCGACATCTGCAGG
Seq A exon
GCCTGTAATAACACGAGCGACAGGAAACACGCAGACTCGATTCTGGAGAAGTACGTCACCGAAATCGTCATGAGCATCGTCACCACGTTCTTCAGTTCTCCCTTCTCAGACCAGAGTACAACTCTGCAG
Seq C2 exon
ACTCGCCAGCCCGTCTTTGTGCAGCTTCTGCAAGGTGTGTTCCGGGTTTACCACTGCAACTGGCTCATGCCAAGCCAGAAGGCCTCGGTGGAGAGCTGCATCCGGGTGCTCTCTGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'36-35,'36-33,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTGCCTACATTAACTTCCTGAA
R:
CTACATCAGAGAGCACCCGGA
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]