GgaEX1030860 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18455752-18460256:+
Coord C1 exon
chr12:18455752-18455877
Coord A exon
chr12:18456584-18456712
Coord C2 exon
chr12:18460136-18460256
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGTAATGAATTGTCTTGCAGGCT
3' ss Score
5.92
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTAAAATTGCGTACATCAACTTCTTGAATCATTGCTATGTGGACACAGAAGTAGAAATGAAAGAGATTTACACCAGTAATCATATGTGGAAGCTATTTGAGAACTTCCTGGTTGACATCTGTCGG
Seq A exon
GCTTGCAACAACACCAGCGACAGAAAGCATGCTGACTCCATATTGGAGAAGTACGTTACAGAAATAGTGATGAGTATCGTCACCACTTTCTTCAGTTCCCCATTCTCTGATCAGAGCACTACTTTGCAG
Seq C2 exon
ACTCGCCAGCCTGTGTTTGTTCAGTTGCTGCAAGGTGTGTTCAGAGTTTACCATTGCAACTGGTTAATGCCAAGCCAAAAGGCATCAGTGGAAAGCTGCATTCGGGTGCTCTCAGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-11/24=10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATTGCGTACATCAACTTCTTGA
R:
ACATCTGAGAGCACCCGAATG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]