Special

GgaEX1030860 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19099388-19103892:+
Coord C1 exon
chr12:19099388-19099513
Coord A exon
chr12:19100220-19100348
Coord C2 exon
chr12:19103772-19103892
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGTAATGAATTGTCTTGCAGGCT
3' ss Score
5.92
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTAAAATTGCGTACATCAACTTCTTGAATCATTGCTATGTGGACACAGAAGTAGAAATGAAAGAGATTTACACCAGTAATCATATGTGGAAGCTATTTGAGAACTTCCTGGTTGACATCTGTCGG
Seq A exon
GCTTGCAACAACACCAGCGACAGAAAGCATGCTGACTCCATATTGGAGAAGTACGTTACAGAAATAGTGATGAGTATCGTCACCACTTTCTTCAGTTCCCCATTCTCTGATCAGAGCACTACTTTGCAG
Seq C2 exon
ACTCGCCAGCCTGTGTTTGTTCAGTTGCTGCAAGGTGTGTTCAGAGTTTACCATTGCAACTGGTTAATGCCAAGCCAAAAGGCATCAGTGGAAAGCTGCATTCGGGTGCTCTCAGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'38-40,'38-38,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATTGCGTACATCAACTTCTTGA
R:
ACATCTGAGAGCACCCGAATG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]