DreEX6092758 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35646898-35654915:-
Coord C1 exon
chr11:35654790-35654915
Coord A exon
chr11:35654340-35654468
Coord C2 exon
chr11:35646898-35647018
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTATGGTTGTTTTCATCCAGGTC
3' ss Score
8.57
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTCAAAATAGCATACATCAACTTCCTGAACCATTGCTACGTGGACACAGAGGTGGAAATGAAGGAGATTTACACCAGCAATCACATGTGGAAGCTCTTTGAAAACTTTCTGGTCGACATATGCAGG
Seq A exon
GTCTGCAACAATACAAGTGACCGCAAACATGCTGACACGACACTAGAAAGCTACGTGACTGAAACCGTGATGAGTATTGTGACGACATTTTTCAGCTCCCCTTTCTCCGACCAGAGCACTAGTTTACAG
Seq C2 exon
ACTCGGCAGCCTGTGTTTGTGCAGCTCCTGCAAGGGGTTTTCAGAGTTTACCACTGTAGCTGGCTCCTTCCTAGCCAGAAGGGCTCAGTGGAGAGCTGTATTAAAGTTCTATCTGATGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'36-36,'36-34,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCATACATCAACTTCCTGAACCA
R:
CAGATAGAACTTTAATACAGCTCTCC
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]