RnoEX0045393 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140438324-140444096:+
Coord C1 exon
chr4:140438324-140438449
Coord A exon
chr4:140439346-140439474
Coord C2 exon
chr4:140443976-140444096
Length
129 bp
Sequences
Splice sites
3' ss Seq
GGCCTCAATCTGTTTTCCAGGCC
3' ss Score
7.29
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTAAGATTGCTTACATCAACTTCCTGAATCACTGCTATGTGGACACTGAGGTGGAGATGAAGGAGATTTACACAAGTAATCACATGTGGAAGTTGTTTGAGAATTTCCTCGTGGACATCTGCAGG
Seq A exon
GCCTGTAACAACACAAGTGACAGGAAGCATGCAGACTCGGTTCTGGAGAAGTACGTCACTGAAATCGTGATGAGCATTGTCACCACCTTCTTCAGCTCTCCCTTCTCAGACCAGAGTACCACTCTGCAG
Seq C2 exon
ACTCGCCAGCCTGTCTTTGTGCAGCTCCTGCAAGGCGTGTTCCGAGTTTACCACTGCAACTGGTTGATGCCGAGCCAGAAAGCCTCGGTGGAGAGCTGTATCCGCGTGCTCTCTGACGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'52-52,'52-51,53-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGCTTACATCAACTTCCTGA
R:
CTACGTCAGAGAGCACGCG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]