DreEX6064853 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16030484-16031126:+
Coord C1 exon
chr18:16030484-16030609
Coord A exon
chr18:16030762-16030890
Coord C2 exon
chr18:16031006-16031126
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTGTTGTTGTAGGTG
3' ss Score
10.26
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GTGAAAATAGCCTACGTAAATTTCGTCAACCACTGCTATGTTGACACTGAGGTGGAGATGAAGGAGATCTACACCAGCGATCACATTTGGAACCTCTTTGACAGTTTCCTGGTAGACATGGCCACT
Seq A exon
GTGTCTATTGGCCCCACAGACAGGAAAAATGCTGACACAAGCCTTGAAAAATACGTCACTGATACCATCATGGCCATTGTCAAGGGCTTTTTTGGCTCCCAGTTTTCTGTCAGCAACTCTAAACTGCAG
Seq C2 exon
GCTCATCAAGCGACTTTTATAAAGTTGCTGCAGTCAGCCTGTAGACTATATAACTGCACATGGCTCAACTCCCTACAGAAGACCAACATTGAGGGCTGCATCAAAACACTTGCTGACGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGCCTACGTAAATTTCGTCAACC
R:
CGACGTCAGCAAGTGTTTTGA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]