MmuEX6007930 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146310987-146323236:-
Coord C1 exon
chr6:146323111-146323236
Coord A exon
chr6:146312839-146312967
Coord C2 exon
chr6:146310987-146311107
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTGCTTTCTCTCTAGGTC
3' ss Score
11.97
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GTCAAAATCGCGTACGTGAACTTTGTCAACCATTGCTACGTTGACACTGAAGTGGAGATGAAGGAGATCTACACAAGTAACCACATTTGGAAGTTATTTGAGAATTTCTTGGTGGATATGGCGAGG
Seq A exon
GTCTGTAACACCACCACAGACAGGAAACACGCAGACACCTTTCTGGAGAGGTGTGTGACAGAGTCAGTCATGAACATTGTGAGCGGCTTCTTCAACTCGCCATTTTCCGACAACAGTACCAGCCTCCAG
Seq C2 exon
ACCCACCAGCCAGTCTTTATCCAGCTGCTGCAGTCTGCCTTCAGAATTTACAACTGTACCTGGCCCAACCCAGCCCAGAAAGCCTCCGTAGAATCCTGTATCAGAGCCCTGGCTGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'54-47,'54-46,56-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGCGTACGTGAACTTTGT
R:
GCCAGGGCTCTGATACAGGAT
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types