GgaEX6002993 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:67941426-67947617:-
Coord C1 exon
chr1:67947492-67947617
Coord A exon
chr1:67942130-67942258
Coord C2 exon
chr1:67941426-67941546
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTTCTTTCCTGTAGGTT
3' ss Score
12.98
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAAAATTGCCTATGTTAATTTTGTTAACCACTGTTACGTGGACACTGAGGTGGAAATGAAAGAAATCTATGCCAGTAACCACATTTGGAAGTTATTTGAGAACTTTCTTGTTGATATGGCAAGG
Seq A exon
GTTTGTAACACAACCACGGATCGTAAACATGCAGACACATCTCTGGAGAAATATGTCACTGAGCCTGTAATGAGCATTGTGAGTGGCTTCTTCAATTCTCCGTTTTCAGATAACAGCACCAGCCTCCAG
Seq C2 exon
ACACATCAACCTGTTTTTATTCAGCTACTGCAGTCTGCTTTTAGAATTTACAACTGTACCTGGCCAAACCCAACTCAGAAAGCCTCAGTGGAGTCATGTATCAAAACTTTGGCTGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'42-53,'42-52,44-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTAACCACTGTTACGTGGACA
R:
CCACTTCAGCCAAAGTTTTGA
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]