BtaEX6023529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83678310-83693895:+
Coord C1 exon
chr5:83678310-83678435
Coord A exon
chr5:83691544-83691672
Coord C2 exon
chr5:83693775-83693895
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTTTGGCTTGTCTTTCCAGGTT
3' ss Score
10.08
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTAAAATTGCTTATGTGAATTTTGTTAATCACTGTTACGTGGACACAGAAGTGGAAATGAAAGAAATCTACACAAGTAACCACATTTGGAAATTATTTGAGAACTTCTTGGTGGATATGGCAAGG
Seq A exon
GTTTGCAACACAACCACAGACAGGAAGCATGCAGACACCTTTTTGGAGAAGTGTGTTACTGAGTCAATAATGAACATTGTGAGCGGCTTCTTTAATTCACCCTTTTCAGACAACAGTACCAGCCTCCAG
Seq C2 exon
ACACATCAGCCAGTTTTTATTCAGCTGCTCCAGTCTGCCTTCAGAATTTATAATTGCACCTGGCCAAATCCAGCCCAGAAAGCCTCAGTGGAGTCCTGTATCAGAACTTTGGCTGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'39-38,'39-37,41-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTAATCACTGTTACGTGGACAC
R:
CCACTTCAGCCAAAGTTCTGA
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]