BtaEX6023759 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92171485-92186809:-
Coord C1 exon
chr5:92186611-92186809
Coord A exon
chr5:92177994-92178116
Coord C2 exon
chr5:92171485-92171613
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCAATGTTGTTTCTTTTTAGCTA
3' ss Score
9.03
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GTTTGATAGAGAAAGTGACAACCGAACTATCCACATCCATCTGTCAGCTAATTGATATCCATTGCAGCAGCTTCTGTGCAGATTTCCAGCCTCTACACGCACCTCTGTATAGTGTCTCCTGTGTAAATCTTGGGCTCCATTCCCACCTTAGCTTCACAGTGTATGCAGCTCACAATATTCCAGAAACCTGGGTGCACAG
Seq A exon
CTATAAAGCATTTTCTTTCTCCTGTTGGCTTACATATGCTGGAAAGAAGCTGTGCCAAGTGAGAAACTGCAGAAATATTCCTGTCAAAAAGTTGTTTTTTTTCTTGGTCAACTGGAATGAAAC
Seq C2 exon
GATCAATTTTCCTCTCGAAATAAAATCACTTCCAAGGGAATCCATGCTCACTATAAAATTGTTTGGGATTACCTATGCAACCAATGCAGATTTATTGGCCTGGACTTGTTTTCCACTGTTTCCAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'10-12,'10-9,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(0.1=0.0)
A:
PF0079219=PI3K_C2=PU(31.8=97.6)
C2:
PF0079219=PI3K_C2=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTGCAGCAGCTTCTGTG
R:
GTGGAAAACAAGTCCAGGCCA
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]