DreEX0006783 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50916288-50917587:-
Coord C1 exon
chr18:50917398-50917587
Coord A exon
chr18:50917125-50917247
Coord C2 exon
chr18:50916288-50916416
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTGCATGTGTGTGTTTCAGGTA
3' ss Score
11.59
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
CTGTAGTGGCGCTCCACCGCTCTCTCCTGAAGCTGCTTCAGATTTTCTTCAGGAGTTTTGATCTGGACTTCAGTGTTTGGGGAACACACACACACTCACACACACCGCCGTCAGACGTGCAGAATCACCGCGGCGTTCTGCAGCTCAGCCTGACAAGTTTACACACACTGCAGCCCGGCTGGAGGAACGG
Seq A exon
GTATGATCACCTCCGCATGAGTGTGTCTGTCACACACAGCGGCAGGAATCTGGCTGAACCGGTGCAGTGTGAGAACATCAGCACGTCTCTGCAGCTCCACGGCAGGATTCACTGCAATCGCCA
Seq C2 exon
GCTGGTGTTTCCTCTGGCCGTCAGAGATCTGCCGTATGAGTCTGTGCTGTGCTTCTCTCTGCTGGGCTGTAAGCAGGGCCGCTGTGCTGATCCGCTGTGCTGGGCTGTTCTTCCTCTCTTCAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(31.2=95.2)
C2:
PF0079219=PI3K_C2=FE(33.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTCCTGAAGCTGCTTC
R:
TACAGCCCAGCAGAGAGAAGC
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]