BtaEX6024028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037534 | KLRF1
Description
Bos taurus killer cell lectin-like receptor subfamily F, member 1 (KLRF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099120]
Coordinates
chr5:100674473-100678639:-
Coord C1 exon
chr5:100678541-100678639
Coord A exon
chr5:100677078-100677233
Coord C2 exon
chr5:100674473-100674612
Length
156 bp
Sequences
Splice sites
3' ss Seq
AAAATAATCCTCTTTTCAAGTTT
3' ss Score
4.81
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACTGTTCTGTGATGTCACACCGATATAAAATCTTATTGGGGATATCTGGAGGACTAAATGGCATTCTGGTTTTGACTTTGATCACCCTGAGTCTGTTAG
Seq A exon
TTTCTCAGGAAGTGCTGCCAAAATGCCTAAAACAGTATAATTCAAACATCACCCAGCATGATGATACTGGATACTTGGAAGTCAATAGTGACACAAGAGGCAATATACATAAGAAAGATGCAGACCACTGTGTTTCTAGAGCTACAGGTCATAAAG
Seq C2 exon
GAATGTGCTCATCAGAATGGCTGAAATATCAAGAAAAGTGCTATTGGTTCTCTAATGAGATGAAAAATTGGAGTGACAGTTATAAGTATTGTTTGGGGGAAAAATCTCATCTACTAATTATTCAGAACCAACTTGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037534-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(26.7=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGTCACACCGATATAAAATCT
R:
AATTAGTAGATGAGATTTTTCCCCCA
Band lengths:
210-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]