HsaEX0034921 @ hg19
Exon Skipping
Gene
ENSG00000150045 | KLRF1
Description
killer cell lectin-like receptor subfamily F, member 1 [Source:HGNC Symbol;Acc:13342]
Coordinates
chr12:9952613-9997601:+
Coord C1 exon
chr12:9952613-9952726
Coord A exon
chr12:9985899-9986048
Coord C2 exon
chr12:9997017-9997601
Length
150 bp
Sequences
Splice sites
3' ss Seq
AAAATAGTCCTGTATTCAAGTTT
3' ss Score
1.26
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTTTGGCAATTATGAATAAAGCTGCTGTAAACATTCATGAGCAGGCTTTTGTGTGGACATAAGTTGTCGACTCATTTGGATAAAGACCAAGAAGTGGGATTACTGGATTATATG
Seq A exon
TTTCTCAGGGAGTATTGCTAAAATGCCAAAAAGGAAGTTGTTCAAATGCCACTCAGTATGAGGACACTGGAGATCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATAAGGACCTTTGTGCTTCGAGATCTGCAGACCAGACAG
Seq C2 exon
ATTCTTCATAAAGGGACCAGCTAAAGAAAACAGCTGTGCTGCCATTAAGGAAAGCAAAATTTTCTCTGAAACCTGCAGCAGTGTTTTCAAATGGATTTGTCAGTATTAGAGTTTGACAAAATTCACAGTGAAATAATCAATGATCACTATTTTTGGCCTATTAGTTTCTAATATTAATCTCCAGGTGTAAGATTTTAAAGTGCAATTAAATGCCAAAATCTCTTCTCCCTTCTCCCTCCATCATCGACACTGGTCTAGCCTCAGAGTAACCCCTGTTAACAAACTAAAATGTACACTTCAAAATTTTTACGTGATAGTATAAACCAATGTGACTTCATGTGATCATATCCAGGATTTTTATTCGTCGCTTATTTTATGCCAAATGTGATCAAATTATGCCTGTTTTTCTGTATCTTGCGTTTTAAATTCTTAATAAGGTCCTAAACAAAATTTCTTATATTTCTAATGGTTGAATTATAATGTGGGTTTATACATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150045_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005916=Lectin_C=PD(34.7=94.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAAGTGGGATTACTGGAT
R:
AGGGAGAAGAGATTTTGGCATT
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)