HsaEX0034922 @ hg19
Exon Skipping
Gene
ENSG00000150045 | KLRF1
Description
killer cell lectin-like receptor subfamily F, member 1 [Source:HGNC Symbol;Acc:13342]
Coordinates
chr12:9985899-9995032:+
Coord C1 exon
chr12:9985899-9986048
Coord A exon
chr12:9994408-9994550
Coord C2 exon
chr12:9994920-9995032
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTCTACATTTCTCTGTAGTAC
3' ss Score
6.63
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
TTTCTCAGGGAGTATTGCTAAAATGCCAAAAAGGAAGTTGTTCAAATGCCACTCAGTATGAGGACACTGGAGATCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATAAGGACCTTTGTGCTTCGAGATCTGCAGACCAGACAG
Seq A exon
TACTATGCCAATCAGAATGGCTCAAATACCAAGGGAAGTGTTGTTATTGGTTCTCTAATGAGATGAAAAGCTGGAGTGACAGTTATGTGTATTGTTTGGAAAGAAAATCTCATCTACTAATCATACATGACCAACTTGAAATG
Seq C2 exon
GCTTTTATACAGAAAAACCTAAGACAATTAAACTACGTATGGATTGGGCTTAACTTTACCTCCTTGAAAATGACATGGACTTGGGTGGATGGTTCTCCAATAGATTCAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150045_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(26.7=56.2)
C2:
PF0005916=Lectin_C=FE(36.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGAGTATTGCTAAAATGCCA
R:
AGAACCATCCACCCAAGTCCA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)