HsaEX0034922 @ hg38
Exon Skipping
Gene
ENSG00000150045 | KLRF1
Description
killer cell lectin like receptor F1 [Source:HGNC Symbol;Acc:HGNC:13342]
Coordinates
chr12:9833303-9842433:+
Coord C1 exon
chr12:9833303-9833452
Coord A exon
chr12:9841812-9841951
Coord C2 exon
chr12:9842321-9842433
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTCTACATTTCTCTGTAGTAC
3' ss Score
6.63
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
TTTCTCAGGGAGTATTGCTAAAATGCCAAAAAGGAAGTTGTTCAAATGCCACTCAGTATGAGGACACTGGAGATCTAAAAGTGAATAATGGCACAAGAAGAAATATAAGTAATAAGGACCTTTGTGCTTCGAGATCTGCAGACCAGACAG
Seq A exon
TACTATGCCAATCAGAATGGCTCAAATACCAAGGGAAGTGTTATTGGTTCTCTAATGAGATGAAAAGCTGGAGTGACAGTTATGTGTATTGTTTGGAAAGAAAATCTCATCTACTAATCATACATGACCAACTTGAAATG
Seq C2 exon
GCTTTTATACAGAAAAACCTAAGACAATTAAACTACGTATGGATTGGGCTTAACTTTACCTCCTTGAAAATGACATGGACTTGGGTGGATGGTTCTCCAATAGATTCAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150045_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(26.7=57.4)
C2:
PF0005916=Lectin_C=FE(36.6=100)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGAGTATTGCTAAAATGCCA
R:
AGAACCATCCACCCAAGTCCA
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development