BtaEX6024056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101155936-101156736:+
Coord C1 exon
chr5:101155936-101155975
Coord A exon
chr5:101155981-101156136
Coord C2 exon
chr5:101156587-101156736
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTGCTCATCTCTCATATT
3' ss Score
0.01
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TGAGTCAGGAAACTTCTGGTACTGTGTCTGCTGCTCATCT
Seq A exon
ATTTACACAGCCTGGAAGGGAAACATCTCCTTCCCCATCAATGTCAGTGCTGATCTGGCTCCTGTGGCTGTCATGCTTGTCTACACTCTTCACCCCAGTGGGGAAATCGTAGCTGACAGTGTCAAATTCCAGGTGGAAAAATGCTTTAAAAACAAG
Seq C2 exon
GTTAGCATAAAGTTCTCGAAGGAGCAGGGACTACCGGGCTCCAGCACTGATCTCCATCTTCAGGCATCCCCTGACTCGGTCTGTGCCCTCCGGGCTGTGGATAAAAGCGTTCTCCTATTGAAGTCAGAACAACAGCTGTCGGCGGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(8.7=100)
A:
PF077039=A2M_N_2=FE(34.0=100)
C2:
PF077039=A2M_N_2=PD(26.0=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGAAACTTCTGGTACTGTGT
R:
CTTTCCGCCGACAGCTGTT
Band lengths:
186-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]