HsaEX1034626 @ hg38
Exon Skipping
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9544238-9545756:+
Coord C1 exon
chr12:9544238-9544292
Coord A exon
chr12:9545096-9545241
Coord C2 exon
chr12:9545598-9545756
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTCGTCTCCTATTTACACAGCCT
3' ss Score
6.07
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
ATGATGGTAAAAGGAGCTATCTTACTCAGTGGACAAAAGGAAATCAGAAACAAAG
Seq A exon
CCTGGAATGGAAACTTCTCGTTCCCAATCAGCATCAGTGCTGATCTGGCTCCTGCAGCCGTCCTGTTTGTCTATACCCTTCACCCCAGTGGGGAAATTGTGGCTGACAGTGTCAGATTCCAGGTTGACAAGTGCTTTAAACACAAG
Seq C2 exon
GTTAACATAAAGTTCTCTAACGAGCAGGGCTTACCTGGTTCCAATGCTAGTCTCTGTCTTCAAGCGGCGCCTGTCTTATTCTGTGCCCTCAGGGCTGTGGATAGGAATGTCCTTCTACTGAAATCTGAACAACAGCTGTCAGCTGAAAGTGTAAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(26.1=100)
A:
PF077039=A2M_N_2=FE(36.4=100)
C2:
PF077039=A2M_N_2=PD(30.7=73.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGTAAAAGGAGCTATCTTACT
R:
GCTTACACTTTCAGCTGACAGC
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains