BtaEX6024064 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101138895-101142331:+
Coord C1 exon
chr5:101138895-101138926
Coord A exon
chr5:101141571-101141739
Coord C2 exon
chr5:101142247-101142331
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTCTTTATTTTCTAGGAT
3' ss Score
12.38
5' ss Seq
ATGGTAACC
5' ss Score
5.31
Exon sequences
Seq C1 exon
ACACTGAAACATATCCAGGGATGGAGAACAAG
Seq A exon
GATCCTCAAAACAATAGGATTTTTCAATGGCAAAATGTGACCTCTTCTCAAAATATTACCGAACTCTCATTCCAATTGATTTTAGAACCAGTGTTTGGAGATTACTCTATTGTCGTGAAAGAAAAATCAGGAAAGACATTGACACACCAATTTACTGTTAATAGAAATG
Seq C2 exon
TGTTGCCCAAGTTTGAAGTTAAGGTCAGTGCACCACAAACAATAACTATTGCAGACGATGAATTCCAAGTCAGTGCATGTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(11.1=100)
A:
PF0183514=A2M_N=PD(57.8=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAAACATATCCAGGGATGG
R:
AGCACATGCACTGACTTGGAA
Band lengths:
115-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]