MmuEX1002603 @ mm10
Exon Skipping
Gene
ENSMUSG00000047228 | A2ml1
Description
alpha-2-macroglobulin like 1 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128575540-128578165:-
Coord C1 exon
chr6:128578145-128578165
Coord A exon
chr6:128576144-128576312
Coord C2 exon
chr6:128575540-128575624
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTCACTGTTTCAAGGAT
3' ss Score
6.96
5' ss Seq
ACGGTAACC
5' ss Score
6.62
Exon sequences
Seq C1 exon
TATCCCTTGATCACCGTTCAG
Seq A exon
GATCCCCAAAGCAATGTGATTTTTCAGTGGATCAATGTGACCACTTTCAGAAACATTACCCAGCTCTCCTTCCAACTGACGCCGGAACCAATATTGGGGGATTACACAATCGTCATAAAAACACAATCGGGAACGACAGTGATGGATCATTTCACTGTTAACCGAGACG
Seq C2 exon
TTTTGCCCAAATTTGAAGTCGAGCTCACTGCACCAGAGACAATAACCATTGCGGACAGTCAATTTCAAATGGTTACATGTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'12-8,'12-7,13-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCCTTGATCACCGTTCAG
R:
TTTGCACATGTAACCATTTGAAATTG
Band lengths:
106-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types