BtaEX6024101 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101333797-101340211:+
Coord C1 exon
chr5:101333797-101333871
Coord A exon
chr5:101334297-101334477
Coord C2 exon
chr5:101339988-101340211
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTCTCTCTCGCCAGCAC
3' ss Score
9.06
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTGGGGTGGACGATGAAGTGACCCTCTCTGCCTACATCACCATCGCCCTTCTAGAGATGCCTCTCCCTGTTACA
Seq A exon
CACCCTGTCGTCCGCAATGCCCTGTTCTGCCTGGACTCAGCCTGGAAGTCAGCCAAGGAAGGATCCCAAGGCAGCCACGTCTACACCAAGGCACTGTTGGCCTATGCCTTTGCCCTGGCGGGTAACCAGGAAAGGAGGACAGAGGTACTGACGTCACTGTATGAGGAAGCCGTGAAGGAAG
Seq C2 exon
ATAATACCATCCACTGGACACGACCTCAGAAACCCAGGTTGCTCACGGAGGACATTTACCAACCCAGGGCTCCGTCTGCGGAGGTGGAGATGACGGCCTACGTGATCCTTGCTCACGTCACGGCCCAGCCGGCCCCGAACCCAGAGGACCTCAAACGTGCCACGAGCATCGTGAAGTGGATCTCAAAGCAGCAGAATTGCCAGGGGGGCTTCTCCTCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'27-35,'27-34,28-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.147
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.3=100)
A:
PF076789=A2M_comp=FE(23.3=100)
C2:
PF076789=A2M_comp=FE(28.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTCTGCCTACATCACC
R:
TCTGCTGCTTTGAGATCCACT
Band lengths:
249-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]