GgaEX1041611 @ galGal3
Exon Skipping
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79423767-79426468:-
Coord C1 exon
chr1:79426394-79426468
Coord A exon
chr1:79424253-79424418
Coord C2 exon
chr1:79423767-79423984
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTTGTTTTTTAAGCAC
3' ss Score
7.6
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGAGGAGTAGAAAATGAGCTGTCACTTTCTGCCTATATCACCATTGCCTTGCTAGAAGCTGGGCACTCCGTGTCG
Seq A exon
CACACAGTAATCCGAAATGCCTTTTATTGCCTGGAGACTGCATCTGAAAAAAATATCACTGACATTTACACGCAGGCACTTGTGGCCTATGCCTTCTGTTTAGCTGGCAAGGCAGAAATATGTGAATCATTCCTTAGAGAACTACAGAAATCAGCAAAGGAAGTTG
Seq C2 exon
ACGGTTCAAAGTACTGGGAGCAGAACCAGAGATCTGCACCTGAAAAATCCCACCTCTTAGACCATGTTCAATCAACTGATGTTGAGATCACCAGCTACGTGCTGTTGGCATTGCTCTACAAACCAAATCGCAGTCAAGAGGATCTCACAAAGGCCTCAGCAATTGTGCAGTGGATTATCAGGCAACAGAATTCCTATGGAGGTTTCGCTTCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'33-37,'33-36,34-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.7=100)
A:
PF076789=A2M_comp=FE(22.2=100)
C2:
PF076789=A2M_comp=FE(29.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTAGAAGCTGGGCACTC
R:
GCATGGAAGCGAAACCTCCAT
Band lengths:
244-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]