BtaEX6024074 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101258499-101260753:+
Coord C1 exon
chr5:101258499-101258573
Coord A exon
chr5:101259291-101259468
Coord C2 exon
chr5:101260530-101260753
Length
178 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTATCTTCTTTATAGCAC
3' ss Score
7.29
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTGGGGTCGATGATGAGGTAACGCTCTCTGCCTATATCACCATCGCTCTACTGGAGATGCCGCTGCTTGTCACC
Seq A exon
CACTCAATTGTCCGCAATGCTCTCTTCTGCCTGGAAAGGGCCTGGCAATCTGCCTCAGAGGCCCAAGGAAGTTTTGTCTATACCAAGGCGTTATTGGCCTATGCCTTCGCACTAGCAGGAGACCAAGCCAAACGAAACGAACTGCTTGAGTCACTACACAAAGAGGCTGTAAAAGAAG
Seq C2 exon
AGGACTCAATCCACTGGCAACGTCCTAGAAAGCCTCAAGAAGTTAATGAACTCTACAGTCCACACCGGGCTCCTTCTGTTGATGTGGAGATGACATCTTACTGCCTCCTTGCCCATCTTACTGCCCAGCCTGCCCCATCTTCAGAAGATCTGTCTGTGGCTACACAGATTGTAAAATGGCTCACCAAGCAACAGAACCCCAATGGCGGCTTCTCCTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'43-53,'43-49,45-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.307
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.4=100)
A:
PF076789=A2M_comp=FE(23.0=100)
C2:
PF076789=A2M_comp=FE(28.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTCTCTGCCTATATCACCA
R:
TTGGGGTTCTGTTGCTTGGTG
Band lengths:
256-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]