RnoEX6015259 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161809946-161811414:-
Coord C1 exon
chr4:161811340-161811414
Coord A exon
chr4:161810887-161811064
Coord C2 exon
chr4:161809946-161810196
Length
178 bp
Sequences
Splice sites
3' ss Seq
GTTTTCATCTTCTTTTACAGCAC
3' ss Score
11.04
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGTGGTGTGGATGATGAAGTGACACTCTCTGCCTATATCACCATTGCTCTGCTGGAGATGCCCCTGCCTGTCACT
Seq A exon
CACAGTGTTGTTCGTAATGCTCTATTCTGCCTGGAAACGGCCTGGGCCTCCATCTCAAACAGCCAAGAAAGTCATGTCTACACAAAAGCACTGCTGGCCTATGCCTTTGCCCTGGCAGGAAACAGAGCCAAGCGAAGCGAGGTGCTTGAATCCCTAAACAAAGACGCTGTGAATGAGG
Seq C2 exon
AGGAATCAGTGCACTGGCAACGTCCTAAGAATGTCGAGGAAAATGTCCGGGAAATGAGGTCCTTCTCTTATAAACCGCGGGCCCCTTCTGCTGAAGTGGAGATGACAGCTTACGTGCTTCTCGCCTACCTCACCTCTGCATCTTCCCGGCCTACGCGAGACCTTTCTTCATCGGACCTGACTACAGCATCCAAGATTGTGAAGTGGATCAGCAAACAACAAAACTCCCATGGGGGGTTCTCCTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'30-39,'30-37,32-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.226
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.0=100)
A:
PF076789=A2M_comp=FE(22.2=100)
C2:
PF076789=A2M_comp=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGTGGATGATGAAGTGA
R:
GAAGAAAGGTCTCGCGTAGGC
Band lengths:
244-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]