BtaEX6024144 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101538122-101543824:-
Coord C1 exon
chr5:101543662-101543824
Coord A exon
chr5:101542895-101542947
Coord C2 exon
chr5:101538122-101538142
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGACGCCCATTTCCTTCTAGTGC
3' ss Score
8.65
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTACCACTTCCTTCTGGTGGCACAGAAGAAGTAGCCACCGTCCGGGTGAGAGGAATTGGACATAATGTCTACTTTGAGGAGAAGAAAAAGGTTCTGATTCAGAGGCAGCAGAATGGCATCTTTATACAAACTGACAAACCTGTCTACAGCCCAGGGCAGGAAG
Seq A exon
TGCATTTCCGTATTGTCACCCTCACCAGCGCCTTTGTTCCAGTGAACGACCAG
Seq C2 exon
TACTCCATTGTGGAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(13.8=29.1)
A:
PF0183514=A2M_N=FE(14.7=100)
C2:
PF0183514=A2M_N=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]