GgaEX6027228 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NK40]
Coordinates
chr27:1684115-1685253:+
Coord C1 exon
chr27:1684115-1684274
Coord A exon
chr27:1684382-1684434
Coord C2 exon
chr27:1685233-1685253
Length
53 bp
Sequences
Splice sites
3' ss Seq
TCCTGCATTGTTCTTTCCAGTGA
3' ss Score
7.9
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTCCAGCCCCCTCCAAGGGAAAGGAGGAAATTGCTCAACTGTCTGTCTCAATCGAAGGAGAGTCCCTGAATACCACCAGGAAGAGCGTGATGCTGAGAGCCCTGAAGCCTGGGATCTTCGTACAGACAGACAAGGCTATCTACAAGCCCGGACAGGAAG
Seq A exon
TGAAATTTCGGATTGTCTCTTTGGATAAAGATTTCATTGCCAGCGACAAGAAG
Seq C2 exon
CTGCCCCTTGTCTTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(16.2=29.6)
A:
PF0183514=A2M_N=FE(17.2=100)
C2:
PF0183514=A2M_N=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCGAAGGAGAGTCCCTGA
R:
CTTCAGGAAGACAAGGGGCAG
Band lengths:
133-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]