GgaEX6027228 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr27:1589310-1590448:+
Coord C1 exon
chr27:1589310-1589469
Coord A exon
chr27:1589577-1589629
Coord C2 exon
chr27:1590428-1590448
Length
53 bp
Sequences
Splice sites
3' ss Seq
TCCTGCATTGTTCTTTCCAGTGA
3' ss Score
7.9
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTCCAGCCCCCTCCAAGGGAAAGGAGGAAATTGCTCAACTGTCTGTCTCAATCGAAGGAGAGTCCCTGAATACCACCAGGAAGAGCGTGATGCTGAGAGCCCTGAAGCCTGGGATCTTCGTACAGACAGACAAGGCTATCTACAAGCCCGGACAGGAAG
Seq A exon
TGAAATTTCGGATTGTCTCTTTGGATAAAGATTTCATTGCCAGCGACAAGAAG
Seq C2 exon
CTGCCCCTTGTCTTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(16.2=29.6)
A:
PF0183514=A2M_N=FE(17.2=100)
C2:
PF0183514=A2M_N=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCGAAGGAGAGTCCCTGA
R:
CTTCAGGAAGACAAGGGGCAG
Band lengths:
133-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]