BtaEX6024147 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101535168-101537390:-
Coord C1 exon
chr5:101537231-101537390
Coord A exon
chr5:101535988-101536072
Coord C2 exon
chr5:101535168-101535294
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCCACTCTTTCCAGTGC
3' ss Score
9.67
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GATCCAAATAACAATAGGATTGCACAGTGGCTGAACGTGGTGCCCAAGCAAGGCATCGTAGACCTGTCCTTCCAGCTGGCACCAGAAGCAACGCTGGGCACCTACAGTGTGGCCGTGGCTGATGGCAAGACCTTCGGGACCTTCAGTGTGGAAGAATATG
Seq A exon
TGCTGCCTAAGTTTAAAGTGGAAGTGGTGGAACCCAAAGAGTTATCAGTGGCGGAAGACTCTTTCTTAGTGAAAGTTTGTTGTAG
Seq C2 exon
GTACACCTATGGAAAGCCCATGCAAGGAGTAGCACACGTATCAGTGTGTCAAAAGCCATATACTTACCGGTATCCGGATCCAGAACGGGAACATTTACCTGACAGATGCAAGAAAGTCTCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(45.7=100)
A:
PF0183514=A2M_N=PD(18.1=72.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTGCACAGTGGCTGAAC
R:
GCTACTCCTTGCATGGGCTTT
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]