GgaEX0027907 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75538931-75540555:+
Coord C1 exon
chr1:75538931-75539090
Coord A exon
chr1:75539927-75540011
Coord C2 exon
chr1:75540441-75540555
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTTTTCCTTACAGTGC
3' ss Score
10.78
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GACCCCAAGAACAACCGGATAGAGCAGTGGCTGAATGTGGTGCCCCAAGAAGGCATTGCAGATCTGTCTTTCCAGCTAAGTGATGAGCCTCTGCTGGGGACATATGTCATCAATGTAACCAACAGGAAAATATATGACAGCTTCACCGTTGAGGAGTATG
Seq A exon
TGCTGCCAAAATTTGAAGTGATCTTTGAGGCACCAGTGAAGATTTATGCACTAGATAAAACTTTTCCACTTCGGGTATGTGGCAG
Seq C2 exon
ATACACCTATGGGAAAGCTGTCCAGGGGATGGTTTATGTGAGTCTTTGTCAGAAGATATCTCAGTTCTTGCCCAGTGCTTCGAAACCTGATCTCTGTCAGGAATTCTACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'12-10,'12-8,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(56.4=100)
A:
PF0183514=A2M_N=PD(6.0=20.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAAGTGATGAGCCTCTGC
R:
ATCAGGTTTCGAAGCACTGGG
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]