BtaEX6024157 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101522367-101524704:-
Coord C1 exon
chr5:101524510-101524704
Coord A exon
chr5:101522878-101522971
Coord C2 exon
chr5:101522367-101522484
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTTGGTGCCTATCAGAAC
3' ss Score
6.96
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTCTATGGGATGTTCCCATTCTGGTACAATCACTACCCCTATCAGGTGGCTGAATACGATGAGTGTCCAGGGTTTGATGGTTGGAACGTTCCACAGCCCCTTATTCAGCCAGTGCTCGAGGAGCGTTGGAACAATCGTCTTGTCATGTGGAGGCCTTGGATCTCTGAAAAAACAGACCTTTTCAGTTTGTTCCAG
Seq A exon
AACATGGGCCTGAAAATACTGTCCAATGCCAAAATCAAGAGGCCAATAGATTGCAGTCACCAGAATTTAAGATACAGCCATACGATGGCTGAAG
Seq C2 exon
TGAATGAAGCTCGTCCAATGGCTTTCAAGCCAGCTCCATTCCAGCCAGTTCAGCCGGAAGAGTCTCAGGTTCGCCAGTACTTTCCAGAGACTTGGCTGTGGGATCTGTTTCCTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'15-18,'15-16,16-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(9.9=22.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCTTATTCAGCCAGTG
R:
ACTGGCGAACCTGAGACTCTT
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]