GgaEX0027912 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79189358-79190744:+
Coord C1 exon
chr1:79189358-79189480
Coord A exon
chr1:79190030-79190177
Coord C2 exon
chr1:79190627-79190744
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCCTACAGGAA
3' ss Score
13.44
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
ATCTATGGGCTCTTTCCATCTATTCCATCTACATACTCCGGGTATCCTCATCAAGTGTCTGAAGATGACAATTCATGCGGGTTCCAAAATTCTGATCAGCCTGATGTGTTTACAGCATTCAGG
Seq A exon
GAAATGGGATTGAAAATTATGTCCAACACCAATATCAGGAAACCAAGACTGTGTCTAACTACTCAGTCAACAACCATGATGCAGGAAAGAGGGATGTTCACTTCCAGGCCTATGTTGATGTTTGCTCAGCCCCATAAGGAATCTAACA
Seq C2 exon
CAGGACATCTGATGACATCTACCTATCAGCCCACTATGTTTTCACCTGTTTCTTCACCTGAGGAGAAAGTGCACAAGTATTTCACAAAAACCTGGCTATGGGATTTGTATTCTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-12/25=11-13
Average complexity
C1*
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(10.0=22.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTCTTTCCATCTATTCCA
R:
CGACAGAATACAAATCCCATAGCCA
Band lengths:
235-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]