GgaEX0027912 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75546985-75548371:+
Coord C1 exon
chr1:75546985-75547107
Coord A exon
chr1:75547606-75547747
Coord C2 exon
chr1:75548254-75548371
Length
142 bp
Sequences
Splice sites
3' ss Seq
GATAAAGGGAAGAGAGGATAGGA
3' ss Score
-44.38
5' ss Seq
GAGGGATGT
5' ss Score
2.17
Exon sequences
Seq C1 exon
ATCTATGGGCTCTTTCCATCTATTCCATCTACATACTCCGGGTATCCTCATCAAGTGTCTGAAGATGACAATTCATGCGGGTTCCAAAATTCTGATCAGCCTGATGTGTTTACAGCATTCAGG
Seq A exon
GGAGAAGTATCCAGTGCTTCAGTTCTTTTTTTTTTTTTTTTTTTCCTACAGGAAATGGGATTGAAAATTATGTCCAACACCAATATCAGGAAACCAAGACTGTGTCTAACTACTCAGTCAACAACCATGATGCAGGAAAGAG
Seq C2 exon
CAGGACATCTGATGACATCTACCTATCAGCCCACTATGTTTTCACCTGTTTCTTCACCTGAGGAGAAAGTGCACAAGTATTTCACAAAAACCTGGCTATGGGATTTGTATTCTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'29-26,'29-24,30-26=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.007 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0020717=A2M=PU(10.0=22.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTCTTTCCATCTATTCCA
R:
CGACAGAATACAAATCCCATAGCCA
Band lengths:
235-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]