BtaEX6024166 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101502881-101504813:-
Coord C1 exon
chr5:101504796-101504813
Coord A exon
chr5:101503382-101503597
Coord C2 exon
chr5:101502881-101503008
Length
216 bp
Sequences
Splice sites
3' ss Seq
TACATGCCTATTGTTGTCAGGAC
3' ss Score
3.73
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGCTTCTCTTCCACTCAG
Seq A exon
GACACCGTGGTGGCTCTCCAAGCTCTCGCCAAGTATGCCACCACTGCCTACGTGCCGTCGGAGCAAGTCAACCTGGCAGTGAAATCCGCTCAGAATTTCCAGCACACCTTCAATGTTCAAGCTGCCAACCGTCTGGTGTTCCAGCAGGAGATGTTGCCCCATATCCCTGGGGTGTACACCTTGGAGGCCTCAGGCAAGGGCTGTATTTATGCGCAG
Seq C2 exon
ACGGTGCTGAGATATAATATCCTCCCTCCGAAAAGTCTGGAGGCCTTTAGTCTTAGTGTGAAAACAACGGGATCTCAGTGTAAGCAACATACTTCACTTGGATCCTTGGTGCTGACGATCCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'30-34,'30-33,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(0.1=0.0),PF076789=A2M_comp=FE(17.2=100)
A:
PF076789=A2M_comp=PD(44.8=18.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]