GgaEX6003238 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79206007-79207566:+
Coord C1 exon
chr1:79206007-79206221
Coord A exon
chr1:79206756-79206971
Coord C2 exon
chr1:79207442-79207566
Length
216 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTCTTTCTTTTCAGGAT
3' ss Score
11.61
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GTGGGCAGATCCATTGGAGTCAGACCCCATCCAAGGCACACAGCACTAGCCTTTGGTCACAGCCACTGTCTGTGGATGTGGAGTTAACAGCTTATGTCCTCCTGGCCCTGCTCTCCAAGCCAAATGTCACAGAGGCTGACTTCACCATAGCCTCTGGCATTGTGGCGTGGCTCACCAGACAGCAAAATGCCTATGGAGGATTTGCCTCAACCCAG
Seq A exon
GATACGGTAGTTGCCCTGCAGGCCTTGGCTAAGTATGCAGCGCTGACACACAACACAAAAGGGGTTGCAGAAGTGAGAGTGAGGTCCCAGAGAGGCTCTGGGAGGAAGTTCCAAGTTTCCTACCACAATCGGCTTTTGGTGCAGGAGATGGCACTGAGAGAAATCCCAGGAAAGTTCTCAGTGCAGGCCCATGGCAGCTGTTGTGTCTTTACCCGG
Seq C2 exon
ACAGTGCTGAGATACAACATTCCCTTCCCTCAGGTTTCCAAGTCCTTTGCCTTACAAGTGAAAACCAAGCCAGACAATTGCACTGAGGACGATGCATACTCTGTTACTCTTTATGTCAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'36-35,'36-34,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(15.4=52.1)
A:
PF076789=A2M_comp=PD(5.3=18.1)
C2:
PF076779=A2M_recep=PU(43.8=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAGATCCATTGGAGTCA
R:
CCTCAGTGCAATTGTCTGGCT
Band lengths:
302-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]