BtaEX6024201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019669 | CD163
Description
Bos taurus CD163 molecule (CD163), mRNA. [Source:RefSeq mRNA;Acc:NM_001163413]
Coordinates
chr5:102269611-102274617:+
Coord C1 exon
chr5:102269611-102269703
Coord A exon
chr5:102269785-102270099
Coord C2 exon
chr5:102274297-102274617
Length
315 bp
Sequences
Splice sites
3' ss Seq
TGTTTCATTTGCTCTTTCAGGGA
3' ss Score
11.87
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAATCGGAGTCAGACACTATATCCATGCAATTCATCATCTTCAGATCCGGAAAGCTCCGTTGTTTTGGAAGAGAATGGTGTTCCTTGCATAG
Seq A exon
GGAGTGGACAGCTCCGCCTGGTAAATGGAGGTGGGCGTTGTGCTGGGAGAATAGAGGTCTATCATGAGGGCTCCTGGGGCACCATCTGTGATGACAGCTGGGACCTGGATGATGCCCACGTGGTGTGCAGGCAGCTGGGCTGCGGTGTGGCCATTAATGCCACAGGTTCTGCTCATTTTGGGGAAGGATCAGGGCCCATCTGGCTGGATGAGGTGAACTGTAATGGAAAAGAACCTCGCATTTCTCAGTGCCGTTCCCATGGCTGGGGGCGGCAGAACTGCAGGCATAAGGAGGATGCAGGAGTTATCTGCTCAG
Seq C2 exon
AGTTCATGTCTCTCAGACTCATCAGTGACAGCAGCAGCGAGACCTGTGCAGGGCGCCTGGAAGTTTTTTACAACGGAGCTTGGGGCAGCGTGGGCAAGAGCGACATGTCTGCAACCACGGTGGGGGTGGTATGCAGGCAGCTCGGCTGTACTGACAAAGGGAGTATCAGACCAGCACCTTCAGACAAGGTGGAGAACAGGTACATGTGGGTGGACAATGTCCGGTGTCCTAAGGGACCTGAAACCTTATGGCAGTGCCCATCATCTCCGTGGAAGAGGAGACTGGCCAGCCCCTCAGAGGAGACCTGGATCACATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019669-'12-15,'12-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGCTCCGTTGTTTTGGA
R:
GATCCAGGTCTCCTCTGAGGG
Band lengths:
355-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]