RnoEX0018532 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156765123-156767338:+
Coord C1 exon
chr4:156765123-156765218
Coord A exon
chr4:156765301-156765615
Coord C2 exon
chr4:156767018-156767338
Length
315 bp
Sequences
Splice sites
3' ss Seq
ATCTTCATTTCTCTTTCCAGCAA
3' ss Score
9.67
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GAAACCAATCGCATACACTGTTGCCATGTAGTTCATCATCTTCGGTCCAAACAACAAGTTCTACCATTGCAAAGGACAGTGACGTTCCCTGCATAG
Seq A exon
CAAGTGGTCAACTCCGCTTGGTAGGTGGAGGTGGTCGCTGCGCTGGGAGAGTAGAGGTCTACCATGAGGGCTCTTGGGGCACCATCTGTGATGACAGCTGGGATCTGACGGATGCCAATGTGGTGTGCAAGCAGCTGGACTGTGGCGTGGCTATTAATGCCACTGGTTCTGCCTACTTTGGGGAAGGGACAGGAGATATCTGGCTAGACGAAATTGACTGCAGTGGAAAAGAGTCTCATATCTGGCAGTGCCATTCACATGGCTGGGGACGCCATAACTGCAGGCACAAGGAAGATGCAGGTGTTGTCTGCTCGG
Seq C2 exon
AGTTCATGTCTCTGAGGCTGACCAATGAAGCCCACAGAGTGAACTGTACAGGCCGTCTGGAAGTGTTTTACAATGGTACATGGGGCAGTATTGGCAGCAGCAATATGTCTCCAACCACTGTGGGGGTGGTGTGCCGTCAGCTGGGCTGTGCAGACAATGGAACAGTGAAACCTACATCTTCAGACAAGACACCAACCAGGCCCATGTGGACAGATAGTGTGCAGTGTCCAAAAGGAGTTGACACTTTGTGGCAGTGCCCCTCATCACCTTGGAAACAGAGACAAGCCAGCCCCTCCCAGGAGTCCTGGATTGTCTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=89.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCATACACTGTTGCCATGT
R:
GCACTGCCACAAAGTGTCAAC
Band lengths:
345-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]