BtaEX6026231 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11651369-11653464:+
Coord C1 exon
chr4:11651369-11651422
Coord A exon
chr4:11652260-11652313
Coord C2 exon
chr4:11653303-11653464
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTAATGTGCTTGCTTTTAGGGG
3' ss Score
9.41
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GGTCCAAATGGCCCACCTGGTCCTGCTGGAAGTCGTGGTGATGGAGGGCCCCCT
Seq A exon
GGGGCTACTGGTTTCCCTGGTGCTGCTGGACGGACTGGTCCCCCTGGACCCTCT
Seq C2 exon
GGTATCTCTGGCCCCCCTGGCCCCCCTGGTCCTGCTGGTAAAGAAGGGCTTCGTGGGCCTCGTGGTGACCAAGGTCCAGTTGGTCGAAGTGGAGAGACAGGTGCCTCTGGCCCTCCTGGCTTTGTTGGTGAGAAGGGTCCCTCTGGAGAGCCTGGTACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAAGTCGTGGTGATG
R:
CCTGTCTCTCCACTTCGACCA
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]