BtaEX6026613 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30612964-30617209:+
Coord C1 exon
chr4:30612964-30613129
Coord A exon
chr4:30613776-30613878
Coord C2 exon
chr4:30616970-30617209
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTTCTATCTTGCAGGTA
3' ss Score
12.68
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAATTCTTGAGAAACCTCTAGAGAAGAAAGCTGGTCGTAACTATGGTCCAGGAGGAAATAAAAAGTTGGTCTATTTTATTGACGACATGAATATGCCTGCAGTGGACTCGTACGGCACTGTCCAGCCCCACACTCTGATTCGACAGCATATTGATTATGGACACTG
Seq A exon
GTATGACAGACAGAAAGTGATGCTTAAAGAAATCCACAGCTGTCAATATGTTGCCTGCATGAATCCGATGGTGGGCAGTTTCACCATCAATCCTAGACTACAG
Seq C2 exon
AGACATTTCACAGTGTTTGCATTCAACTTCCCATCGCTGGATGCACTGAACACCATCTACAGCCAGATCCTGAGTTTCCATTTCCAGCAGCAAGCATTTGGTCCCTCAGTTCTCAGGAGTGGCCCCACTTTGATACAGGCAACAATCGCATTCCATCAGATGATGGCACATACATTTTTACCCACGGCCATTAAATTCCACTACCTCTTTAATTTGAGAGACTTGTCAAACGTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'58-60,'58-59,59-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.3=100)
A:
PF127752=AAA_7=FE(12.5=100)
C2:
PF127752=AAA_7=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACTCTGATTCGACAGC
R:
AGTGGAATTTAATGGCCGTGGG
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]