MmuEX6083437 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118015292-118018871:-
Coord C1 exon
chr12:118018706-118018871
Coord A exon
chr12:118017600-118017702
Coord C2 exon
chr12:118015292-118015531
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTCCTGTTCCGTAGGTA
3' ss Score
10.61
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAATTCTTGAAAAACCTCTAGAGAAAAAAGCTGGTCGTAACTATGGTCCAAAAGGAAATAAAAAACTGGTTTATTTCATTGATGATCTGAACATGCCTGAAGTGGATTTGTATGGCACTATCCAGCCTCATGCGCTGCTTCGGCAGCATATTGACTATGGGCACTG
Seq A exon
GTACGATCGACATAAAATTATGCTCAAGGAAATCCGCAACTGCCAGTACGTAGCCTGCATGAATCCCATGGTGGGCAGCTTCACAGTCAACCCAAGGCTGCAG
Seq C2 exon
AGACATTTCACTGTGTTTGCATTCAACTTTCCATCTTTGGATGCGCTGACCACCATCTATGGTCAGATCTTCAGCTTCTATCTCCAGCAACAAGCATTCTGCCCATCAGTTCTCAGGGCTGGCCCCTCTTTGATCCAGGCAACAATCGCATTTCATCAGATGATGGCAGAGAGCTTTGTGCCTACAGCTATTAAATTCCATTACAATTTTAATCTAAGAGACTTATCAAACATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'58-58,'58-57,59-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.3=100)
A:
PF127752=AAA_7=FE(12.5=100)
C2:
PF127752=AAA_7=FE(29.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTCGTAACTATGGTCCA
R:
ATGGGCAGAATGCTTGTTGCT
Band lengths:
244-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types