DreEX6040399 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19472698-19476887:-
Coord C1 exon
chr16:19476722-19476887
Coord A exon
chr16:19476535-19476637
Coord C2 exon
chr16:19472698-19472937
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTCTCTCGTTTCTAGGTA
3' ss Score
12.72
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AGGAGATGGAGAAACCCCTGGAGAGGAAGGCTGGCAGGAGCTTCGCACCGCCGAGAAACAAGAGACTGCTCTATTTCATTGATGACATGAACATGGCAGCCGTGGACAGTTATGGGACGTCCCAACCACACGCTCTTATTCGCCAACATCTGGATTATCAGCACTG
Seq A exon
GTATGACAGCCAGAAGTTAACAATGAAAGACATAAACAACACTGATTATGTGTCTTGTATGAATCCAACTTCAGGGAGTTTCACAATCAACCCCAGATTGCAG
Seq C2 exon
AGGCATTTCACAGTGTTAGCGGTCAGCTCACCCAGCCGTGAGACCCTCAGCTCTATCTACGGCTCCATTCTGAACATCCACCTGCAGATACTGCCGTTCAGCCCAGCTGTAATGAGGTGCAGTGCGTTTGTCCTGAAAGCAGCTTTAACCCTACATGAAAGAGTCCTCCAGCACTTCCTCCCTTCCTCCTCCAAGTTTTATCATCTCTTCAACTTGTGGGATTTGTCTCGGATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'22-24,'22-22,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(20.3=100)
A:
PF127752=AAA_7=FE(12.5=100)
C2:
PF127752=AAA_7=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCGAGAAACAAGAGACTG
R:
GCACTGCACCTCATTACAGCT
Band lengths:
244-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]