BtaEX6026938 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44185779-44189951:-
Coord C1 exon
chr4:44189894-44189951
Coord A exon
chr4:44187878-44188054
Coord C2 exon
chr4:44185779-44185852
Length
177 bp
Sequences
Splice sites
3' ss Seq
GATTTTCATGCCTTTTAAAGGAA
3' ss Score
7.38
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
CTTAGTGGAAGAAAAAAACCTCATACTAAAGGAATTTGAGAAGATACCTAAGCCAGGA
Seq A exon
GAAATGGAGAAGAAGATGAGACTATTGAGAGAAAGCACTGAAGAATTACGTAAGGAAGTAATGCAGAAGAAATTAGAAATTAAAAATTTACGGGAAGATTTGACATCTAAGCAAAAGCAATTACTAAAGGAGCAGAAGGAGCTAGAAGAACTGCTTGAGTATCAGGTCACCTTAAAG
Seq C2 exon
GATGAAGTGGTCCACCATCAATCCATCCCTGTACAAATTGGAAAAGAGATAGAAAAAACAACACGCAAAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.153 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATTTGAGAAGATACCTAAGCCA
R:
TCTATCTCTTTTCCAATTTGTACAGG
Band lengths:
82-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]