GgaEX6000481 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12556920-12558342:-
Coord C1 exon
chr1:12558285-12558342
Coord A exon
chr1:12557603-12557779
Coord C2 exon
chr1:12556920-12556993
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCTCTACTTCATTTTTAAAGGAA
3' ss Score
7.21
5' ss Seq
AAAGTAACA
5' ss Score
1.87
Exon sequences
Seq C1 exon
TTTGCAAGAAGAGAAAAGACTTCTGGAAAAAGAATATGAAAGAATTCCAAAGCAAGGT
Seq A exon
GAAGCAGATAAGAAAATGAGAAAAATGAAAGAGGAGTGTGATGAGCTCCACAAAGAAGTAATCCAAAGGAAAGCAGAAGTTAATGCAATGAAAGAAGACATTTCATCCAAGCAGGAGCTGATGCTAATAGATAAGAAGGAAGTGGAAAAGCTTCTGGAGGACCAGGATAGTTTAAAA
Seq C2 exon
GATGAATTAGTTAAGATCCTTGGTGTTCCAGTGCAACTTAAAAAAGAAGCTGAGAAGATAAATCAGAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.305 C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGAAAAGACTTCTGGAAAAAGA
R:
AAGTTGCACTGGAACACCAAGG
Band lengths:
90-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]