GgaEX1001980 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12555248-12557779:-
Coord C1 exon
chr1:12557603-12557779
Coord A exon
chr1:12556920-12556993
Coord C2 exon
chr1:12555248-12555475
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTTTGTTGCTAGGAT
3' ss Score
9.26
5' ss Seq
AATGTATGC
5' ss Score
3.91
Exon sequences
Seq C1 exon
GAAGCAGATAAGAAAATGAGAAAAATGAAAGAGGAGTGTGATGAGCTCCACAAAGAAGTAATCCAAAGGAAAGCAGAAGTTAATGCAATGAAAGAAGACATTTCATCCAAGCAGGAGCTGATGCTAATAGATAAGAAGGAAGTGGAAAAGCTTCTGGAGGACCAGGATAGTTTAAAA
Seq A exon
GATGAATTAGTTAAGATCCTTGGTGTTCCAGTGCAACTTAAAAAAGAAGCTGAGAAGATAAATCAGAAAAAAAT
Seq C2 exon
CGATGCAGAGAAGAAGAATGAAGACCTTAATAACCAAATGCAGGAGTTAAACAGTACCCTGAACGACATCGACAAAGGGACAGAAAAGATTTTGCAAGAAAGAGAAGATGTAATGAAGGAACTGGATGGAAAACGAGCTTTGCTGGAAAGCAAAGAACAAGAATGTGCTGCTTTGGCAAGACTGCTAGAAATTGGCAGAGAAAAGCAACTGGCGATCCTGGTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=0.160 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAGCTTCTGGAGGACCA
R:
TCCAGCAAAGCTCGTTTTCCA
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]