DreEX0019419 @ danRer10
Exon Skipping
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20466681-20467364:+
Coord C1 exon
chr4:20466681-20466857
Coord A exon
chr4:20466937-20467010
Coord C2 exon
chr4:20467080-20467364
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTAACAATGTCTTTCACCAGGCT
3' ss Score
8.08
5' ss Seq
ATCGTATGT
5' ss Score
5.94
Exon sequences
Seq C1 exon
GAGCTAGAAAGCAGGTATGCGACCCTGAAGAACAGTTGTGAGGAGGTGAGGAAAGAGGTTCTTAAGCTTAGACAGGAGGTGAGGACTCTAACTGAGAGCATGGAGACTCAACAGAAACATATCAAGAAAGAACAACTTGAACTGGAGGATTTAAAAAATCGTGTTGAGAGCAATGAG
Seq A exon
GCTGAGCTGGCTCAGGTGCTCCTCATACCTGTTCAACTGAGAAAAGAGGTCGACAGGGTTGCCCACAAGAAATC
Seq C2 exon
GGAGTTGGAGAAGCAGGTTGCAAAAATAGAGCAACATCGTTTGGATAATGTGGAGCATCAGAAGAGTTTGGAGGCAAAATGTGAAAAAGTGAAGGAGGCCATAAAAGAGGTGGTACGAGAACAGGAAGGCCACAAGGCTCAGCTAGTGACTGCAGAGAACAAACAAGACAGACTTCTCACAGATTTGCAAATGGCCAAAGCAAAAGAGGCAGCGTTTATGGACCAAAGGTCATTATTTCAGCATTTCTGTAACATTAATGCCAAACATATTCAAATTCATCTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794_MULTIEX1-3/9=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCCTGAAGAACAGTTGT
R:
TGCAACCTGCTTCTCCAACTC
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]