HsaEX0013054 @ hg19
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:29296]
Coordinates
chr7:76885650-76889553:+
Coord C1 exon
chr7:76885650-76885826
Coord A exon
chr7:76888312-76888385
Coord C2 exon
chr7:76889326-76889553
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGATTTCGTTTCTTTACTAGGAT
3' ss Score
9.18
5' ss Seq
AGTGTATGA
5' ss Score
0.67
Exon sequences
Seq C1 exon
GAAATGGAGAAGAAGATGAAAATATTGAGAGAAAGCACTGAAGAATTACGTAAAGAAATAATGCAGAAGAAATTAGAAATTAAAAATTTACGAGAAGATTTGGCATCTAAACAAAAGCAATTATTAAAAGAGCAGAAGGAACTAGAAGAATTGTTGGGACATCAGGTCGTCCTAAAG
Seq A exon
GATGAAGTGGCCCACCATCAAACCATTCCAGTACAAATTGGAAAAGAGATAGAAAAAATAACACGCAAAAAAGT
Seq C2 exon
AGAAATGGAAAAGAAAAAAATTGTCTTGGAACAAGAAGTCAAAACGCTAAATGACTCCCTAAAGAAAGTTGAAAACAAGGTTAGTGCTATAGTGGATGAGAAGGAAAATGTAATAAAGGAAGTTGAAGGCAAACGAGCCTTACTTGAAATCAAAGAACGAGAACATAACCAATTGGTCAAGCTATTGGAATTAGCCAGAGAGAATGAAGCAACTTCATTAACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-'11-13,'11-11,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTGTTGGGACATCAGGTC
R:
GCTCGTTTGCCTTCAACTTCC
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)