GgaEX1001980 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13710735-13713266:-
Coord C1 exon
chr1:13713090-13713266
Coord A exon
chr1:13712407-13712480
Coord C2 exon
chr1:13710735-13710962
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTTTGTTGCTAGGAT
3' ss Score
9.26
5' ss Seq
AATGTATGC
5' ss Score
3.91
Exon sequences
Seq C1 exon
GAAGCAGATAAGAAAATGAGAAAAATGAAAGAGGAGTGTGATGAGCTCCACAAAGAAGTAATCCAAAGGAAAGCAGAAGTTAATGCAATGAAAGAAGACATTTCATCCAAGCAGGAGCTGATGCTAATAGATAAGAAGGAAGTGGAAAAGCTTCTGGAGGACCAGGATAGTTTAAAA
Seq A exon
GATGAATTAGTTAAGATCCTTGGTGTTCCAGTGCAACTTAAAAAAGAAGCTGAGAAGATAAATCAGAAAAAAAT
Seq C2 exon
CGATGCAGAGAAGAAGAATGAAGACCTTAATAACCAAATGCAGGAGTTAAACAGTACCCTGAACGACATCGACAAAGGGACAGAAAAGATTTTGCAAGAAAGAGAAGATGTAATGAAGGAACTGGATGGAAAACGAGCTTTGCTGGAAAGCAAAGAACAAGAATGTGCTGCTTTGGCAAGACTGCTAGAAATTGGCAGAGAAAAGCAACTGGCGATCCTGGTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=0.160 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAGCTTCTGGAGGACCA
R:
TCCAGCAAAGCTCGTTTTCCA
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]