MmuEX0009596 @ mm9
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:20823804-20827158:-
Coord C1 exon
chr5:20826982-20827158
Coord A exon
chr5:20825347-20825420
Coord C2 exon
chr5:20823804-20824031
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGATTGTATTTCTTTACCAGGAT
3' ss Score
8.48
5' ss Seq
AGTGTATGG
5' ss Score
1.5
Exon sequences
Seq C1 exon
GAAATAGAGAAGAAGACGAGGCTCCTGAAAGAAAGCACTGAGGAACTGCGCAAGGAGGTGATTCAGAGGAGACTGGAGATCAAAAACCTGCGGGAAGATGTGGTGCTCAAGCAGAAGCAGCTAGTGAGGGAGCAGAAGGAGCTGGAGGAGCTGATGGAGTATCAGGTTGGCTTGAAG
Seq A exon
GATGACGTGGTCCACCATCAAAGTGTTCCTGTACAAATTACAAAGGAGATAGAAAAAATGACACGCAAAAAAGT
Seq C2 exon
AGAAACAGAGAAGAAAAATATTGTCTTGGAATCTGAGTTGAAAGAGCTAAGTGACTCTTTAAAGAAGCTTGAAAACAAAGTCAACACTCTTGCGGAAGAAAGGGATGACATAATGAAGGAAGTTGAGGGCAAGCGAACCTTACTAGAAGTCAAAGAACGAGAGTATGGCCAACTGCTTAAACTATTGGAACTAACCAAAGAGAACGAAGCCTCCTCGCTAGCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
75%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF102944=Methyltransf_16=PU(25.9=50.8)
A:
PF102944=Methyltransf_16=FE(20.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGAGCTGATGGAGTA
R:
TAAGGTTCGCTTGCCCTCAAC
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: