GgaINT0109134 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12555248-12556993:-
Coord C1 exon
chr1:12556920-12556993
Coord A exon
chr1:12555476-12556919
Coord C2 exon
chr1:12555248-12555475
Length
1444 bp
Sequences
Splice sites
5' ss Seq
AATGTATGC
5' ss Score
3.91
3' ss Seq
TTGTTAACACGTATCCACAGCGA
3' ss Score
6.15
Exon sequences
Seq C1 exon
GATGAATTAGTTAAGATCCTTGGTGTTCCAGTGCAACTTAAAAAAGAAGCTGAGAAGATAAATCAGAAAAAAAT
Seq A exon
GTATGCTTTTAATAAATAAAATAAATATACTTATCTATGTATTCCTTACTTTCATCCATTTGTTACAGAGACTAATTAGAGTACAGCTGTTGATTAAAATTAGGATCATAATTTAAAACAGCATTGATAACCCACTCAAAATCCATGCACCCTTCTAACAGATGTTGTGTATGCGGTGAAATACTTTCCATTTAAACACTTTCCTCTATGGGAAGATGTCCCTGCCCATGTCGGGTTGGTGGAACAAGATAATGTTTAAGGTCTATCCAACCCAAACTATTCTATATTTCTATATAATTTAAGCACAATAAAGAAAAATAGGGAACAAAACTTAGCTGAAAATGATTTAACCATCTTACTGAGCTACAGTGATACATATTGGATCTGCTTAGTAGATTCCCAATGGTTAACAACGTTAAGCTGTTACGTACACTGCATAACGTAGCAATTAGCCTGTTCTGCATGTTCTGCATGTTCTACATCTCAGTGAGTGCACATAAGTTTGTTTACATTGGCCTCAGTGAAACTGCAGCAGTTTTCACACAGGTGGAGGTCTGACCCAAAGGAAACCAGCATTTTCCCTCCGTGCTTGCATAGAGGTTTGTCAGGCAGAGGTGGTTTACTATAAGCTCCCAATGTGAACTCTGTCAAATATTTCAGCTAGGAAAGCAAGCCAGCCAGCAGCCTTTTCTCTGTTTCTGTGGCTGTTTTTTCCTCCATCAGAGCATGATGTGCTGCTTTCTGCATGTGTAAAGTCTATCTGGTACCTGCAGTATCAGCCCGGTCTCTCCCAGCTGCTGGAAGCCAAGTGCCCATCTGGCTGAACAGTACACATATGCCCTGTTAGCATACAGGGATACACAGAGGGTTTTGTGTTGCCTGACTGCAGTCCCTGTCAGAAATAAAGCTATTGGTTAACTACGTTAAATTTCTCAGTTTTAAAATTTAAGTGATTGTTTTCTTTTATTTTCTCCTCAGTACTCTGCTTAATGCTTAATGTAACTCTGCTATTGTAGATACAAGAAGTTTTCCCTATTGTGTTACAGAAAAGCAATTTTAAAGAGTGCACTGGGTAGATTATTAATGGAGTATTTAAATGAGTTCCTTCTACCTGAGACATCACAGAACAAACTCAGAGCTTCCAGCCTTGCAATGACAGCTAGATGCATCACAATCCTGTATCCACTGATGCTGACAGCTCCGTTACCATTTTTTAACAGTGTTCTGATGCTAAGATCTCCATGATCAGCTGTAGTTTGATGCACAACTGTATTGGAATGCGAAGATTTTCACTGTCTGTAGCTTGCTATTGTACATGCTGAGTAGATAGCTGTGGCTTTGAAATAATTTTGTGCTCTCATGAACACTGACAACATATATTTTGTCATTTAAATACACACATAGCAATGTCAACCTCTACTCTTTTGTTAACACGTATCCACAG
Seq C2 exon
CGATGCAGAGAAGAAGAATGAAGACCTTAATAACCAAATGCAGGAGTTAAACAGTACCCTGAACGACATCGACAAAGGGACAGAAAAGATTTTGCAAGAAAGAGAAGATGTAATGAAGGAACTGGATGGAAAACGAGCTTTGCTGGAAAGCAAAGAACAAGAATGTGCTGCTTTGGCAAGACTGCTAGAAATTGGCAGAGAAAAGCAACTGGCGATCCTGGTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309:ENSGALT00000013526:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAATTAGTTAAGATCCTTGGTGT
R:
CTCTCTACCAGGATCGCCAGT
Band lengths:
302-1746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]