BtaEX6028094 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012237 | AEBP1
Description
Bos taurus AE binding protein 1 (AEBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174839]
Coordinates
chr4:77888300-77888840:-
Coord C1 exon
chr4:77888778-77888840
Coord A exon
chr4:77888579-77888650
Coord C2 exon
chr4:77888300-77888434
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCACAAGCACTCTCCCCCAGAGC
3' ss Score
3.98
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTGGACCCCTCCCAGATCCCTGGGGGGGTCCAGGAGAAGAGACCGACGTGGAGCACCAGCCTG
Seq A exon
AGCCGGAGGAGGAGACGGAGCAGCCCACGCTGGACTACAATGACCAGATAGAGCGGGAAGACTACGAGGACT
Seq C2 exon
TTGAATACATCCGCCGCCAGAAGCAGCCCAGGCCACCCCCCAGCAGGAGAAGGCCAGAGAGGCCCTGGCCTGAGCGCCCTGAGGAGAAGGCTGAGCCGCCTGGGCGGGGCTTTGAGGCCCCAGAGGAGAAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012237-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGGAGAAGAGACCGAC
R:
GATCTTCTCCTCTGGGGCCTC
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]