RnoEX6043180 @ rn6
Exon Skipping
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86104151-86104632:+
Coord C1 exon
chr14:86104151-86104222
Coord A exon
chr14:86104344-86104415
Coord C2 exon
chr14:86104522-86104632
Length
72 bp
Sequences
Splice sites
3' ss Seq
CATTGTTATCTTCCCCTCAGAGC
3' ss Score
10.22
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAAGAACCTCCCTGAATACCTGGCAGGGCCAAGGAGAAGAGACCCAAGTGGAGGCCAGGCAGCACCGGCCAG
Seq A exon
AGCCAGAGGAGGAGACCGAGATGCCCACACTGGACTACAATGACCAGATAGAGCGGGAAGATTATGAAGACT
Seq C2 exon
TTGAGTACATCAGGCGCCAGAAGCAGCCCAGACCCACACCCAGCAGGAAGAGGATCTGGCCAGAGCCCCCTGAGGAGAAGACCCAAGAGCCGGAGGAAAGGAAGGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCCCTGAATACCTGGCA
R:
CTTCCTTTCCTCCGGCTCTTG
Band lengths:
172-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]